Friday, July 19, 2013

running summarize_taxa_through_plots on cluster

I git-cloned Qiime into ~/src. I installed with --prefix=/home/username/local and then had to change the line in ~/.qiime_config to qiime_scripts_dir <tab> /home/username/local/bin.

In my ~/src I git-cloned qcli and installed it with --prefix=/home/username/local. I had to add /home/username/local/lib/python2.7/site-packages, /home/username/local/bin, and /home/username/local/lib to my $PYTHONPATH.

I also had to load the module matplotlib.

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